[Bioperl-l] loading sequence error bioseq

snoze pa snoze.pa at gmail.com
Tue Jan 29 13:22:56 EST 2008


Dear User,

 After successfully creating a database bioseqdb and loading ncbi_taxonomy
successfully I am getting following error message while loading sequences
into database.

load_seqdatabase.pl -host localhost -dbname bioseqdb .....etc

MSG: insert in Bio::DB::BioSQL::SeqFeatureAdaptor (driver) failed, values
were ("","31") FKs
MSG: insert in Bio::DB::BioSQL::SeqFeatureAdaptor (driver) failed, values
were
MSG: insert in Bio::DB::BioSQL::SeqAdaptor (driver) failed, values were

Column 'dbname' cannot be null

STACK: /usr/local/bioperl-
db-1.5.2_100/scripts/biosql/load_seqdatabase.pl:620
-----------------------------------------------------------

 at /usr/local/bioperl-db-1.5.2_100/scripts/biosql/load_seqdatabase.pl line
633

Any Idea?

Thanks in advance
s


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