cjfields at uiuc.edu
Thu Jan 31 07:39:46 EST 2008
The easiest way to take care of these (so we don't forget about them
and can track changes) is to add them as BioPerl bugs/enhancement
requests to bugzilla, along with example reports and code.
On Jan 31, 2008, at 4:48 AM, Bernd Web wrote:
> I noticed that the HTMLWriter output for a BLAST report may not be
> correct if more than one sequence was "blasted".
> After the BLAST report of the first sequence the report is ended with:
> Search Parameters
> Parameter Value
> Search Statistics
> Statistic Value
> Produced by Bioperl module Bio::SearchIO::Writer::HTMLResultWriter on
> Thu Jan 31 11:35:51 2008
> Revision: $Id: HTMLResultWriter.pm,v 1.41 2006/10/02 04:45:37
> tseemann Exp $
> Then the second HTML blast report follows.
> Although maybe generally 1 sequence is blasted by a user requiring
> HTML output, this may be nice to fix?
> Also for the HTML Writer of FastA reports the statistics section is
> An additional issue with HTMLWriter containing more than 1 BLAST
> report is the following:
> When a sequence ID occurs more than once, the link (on the E-value) is
> to the first occurrence since it is not report specific.
> In case the above is regarded as unwanted, I'd be happy to make a
> concise example with code.
> Best regards,
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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