[Bioperl-l] found the error tarp in load_seqdatabase.pl

Hilmar Lapp hlapp at gmx.net
Thu Jan 31 08:12:25 EST 2008

On Jan 30, 2008, at 2:30 PM, snoze pa wrote:

> Hi Hilmar,
>  After spending lots of time i figure out the error. I am able to load
> sequences if the sequences do not have following entry
> xrefs (non-sequence databases):

Is this the literal value? I am asking because I can't find this in  
the file at


which you said was giving you grief. So does the genbank file above  
now load, or how can I identify the critical line in there?

> If the Genbank sequence have this entry then script  
> load_seqdatabase.pl is
> crashing. I try it in couple of sequences and found it is the  
> culprit line
> genbank format.  But this line is important as it contain lots of
> information... so I am wondering how to solve this problem
> Any help?
> Thanks in advance
> s
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :

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