[Bioperl-l] found the error tarp in load_seqdatabase.pl

Hilmar Lapp hlapp at gmx.net
Thu Jan 31 08:12:25 EST 2008


On Jan 30, 2008, at 2:30 PM, snoze pa wrote:

> Hi Hilmar,
>
>  After spending lots of time i figure out the error. I am able to load
> sequences if the sequences do not have following entry
>
> xrefs (non-sequence databases):

Is this the literal value? I am asking because I can't find this in  
the file at

http://biopython.open-bio.org/SRC/biopython/Tests/GenBank/cor6_6.gb

which you said was giving you grief. So does the genbank file above  
now load, or how can I identify the critical line in there?

	-hilmar
>
> If the Genbank sequence have this entry then script  
> load_seqdatabase.pl is
> crashing. I try it in couple of sequences and found it is the  
> culprit line
> genbank format.  But this line is important as it contain lots of
> information... so I am wondering how to solve this problem
>
> Any help?
>
> Thanks in advance
> s
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

-- 
===========================================================
: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
===========================================================







More information about the Bioperl-l mailing list