[Bioperl-l] Problems when trying to persist a sequence in my BioSQL database using BioPerl
gabrielle_doan at gmx.net
Tue Jul 1 04:29:37 EDT 2008
Hi Hilmar and Sendu,
thanks a lot for your help! After installing the latest version of
Scalar::Util I didn't get the error anymore. Unfortunately, I'm facing
an other problem. I tried to insert the Genbank file of the human
Chromosome 1 - downloaded from the NCBI
into my BioSQL database with a perl script (load_seqdatabase.pl from the
BioPerl db package), but after about one hour I received the message
'Out of memory'. After the abort I have only 13 entries in my database.
I can't image that four GB RAM are not sufficient. Does anybody have the
same problem? I am greateful for any hint!
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