[Bioperl-l] Clustalw module
jason at bioperl.org
Wed Jul 2 11:02:24 EDT 2008
did you install bioperl-run package as well as bioperl core?
On Jul 2, 2008, at 10:34 AM, Nathan Haseley (RIT Student) wrote:
> I am working with the Bioperl module
> Bio::Tools::Run::Alignment::Clustalw. I try to include the package
> in my script as follows:
> use Bio::Seq;
> use Bio::SearchIO;
> use Bio::Tools::Run::StandAloneBlast;
> use Bio::DB::GenBank;
> use Bio::Tools::Run::Alignment::Clustalw;
> use Bio::Root::Exception;
> use Error qw(:try);
> but I keep getting the following error message:
> Can't locate Bio/Tools/Run/Alignment/Clustalw.pm in @INC (@INC
> contains: /etc/perl /usr/local/lib/perl/5.8.8 /usr/local/share/perl/
> 5.8.8 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.8 /usr/share/
> perl/5.8 /usr/local/lib/site_perl .) at ./BlastTwoCompare.pl line 6.
> BEGIN failed--compilation aborted at ./BlastTwoCompare.pl line 6.
> The Clustalw program is configured correctly to work in my
> directory. Am I missing something obvious or is there something
> wrong with my BioPerl configuration? Any advice on how to fix
> this? Thank you for your time.
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