[Bioperl-l] finding sequence 2000 bp upstream in bioperl?

RICHARD GREEN greener at u.washington.edu
Wed Jul 2 14:10:20 EDT 2008

Howdy Bioperlers,

Quick question, I have scripts that pull out a sequence from genbank, but I am looking for a command that would extract 2000 base pairs upstream of the sequence. Is there a way to extract just the Gene promoter region from genbank? Any advice that folks can give me a is muchly appreciated.

Thanks again

-Rich Green

More information about the Bioperl-l mailing list