[Bioperl-l] IUPAC support for DNA alignment

Alexie Papanicolaou apapanicolaou at ice.mpg.de
Wed Jul 2 16:24:50 EDT 2008

clarifying (also sorry for the double post before).

"equally likely" => "found in sample in which case it is match"

right it's dark outside, time to go home.

> I dunno about Ns too. They could be unknown characters (in which case 
> full score version could be 0 as well) or really mean all four 
> nucleotides are equally likely.

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