[Bioperl-l] install Perl

Tran Trang vttran at i3s.unice.fr
Fri Jul 4 10:00:28 EDT 2008


Dear:

I followed the instruction "INSTALLING BIOPERL THE EASY WAY USING
'Build.PL'" at the website
http://bio.perl.org/wiki/Installing_Bioperl_for_Unix for installing the
BIOPERL package. When I do the command

>perl Build.PL

I obtained the following lines. I seems that is not good and I did not win
to install this package? I have the same problem when installing
BIOPERL-RUN package.

Could you please help me how can i do it now?

Thank you in advance!

Best regard,
Trang

-------------------------------
Installation BIOPERL version bioperl-1.5.2_102 gives:
...
Manifying blib/lib/Module/Build/Compat.pm ->
blib/libdoc/Module::Build::Compat.3pm
  /usr/bin/make  -- OK
Running make test
/usr/bin/perl Build --makefile_env_macros 1 test
t/basic...............ok
t/compat..............ok
t/destinations........ok
        8/113 skipped: various reasons
t/ext.................ok
t/extend..............ok
t/files...............ok
t/help................ok
t/install.............ok
t/manifypods..........ok
t/mbyaml..............ok
t/metadata............ok
        8/47 skipped: YAML_support feature is not enabled
t/metadata2...........ok
        4/18 skipped: YAML_support feature is not enabled
t/moduleinfo..........ok
t/new_from_context....ok
t/notes...............ok
t/par.................skipped
        all skipped: C_support not enabled
t/parents.............ok
t/pod_parser..........ok
t/ppm.................skipped
        all skipped: C_support not enabled
t/runthrough..........ok
        11/32 skipped: various reasons
t/signature...........skipped
        all skipped: $ENV{TEST_SIGNATURE} is not set
t/test_type...........ok
t/test_types..........ok
t/tilde...............ok
t/versions............ok
t/xs..................skipped
        all skipped: C_support not enabled
All tests successful, 4 tests and 31 subtests skipped.
Files=26, Tests=750, 14 wallclock secs ( 5.77 cusr +  8.16 csys = 13.93 CPU)
  /usr/bin/make test -- OK
Running make install
/usr/bin/perl Build --makefile_env_macros 1 install
mkdir /usr/local/man/man1: Permission non accord�e at
/usr/share/perl/5.8/ExtUtils/Install.pm line 112
make: *** [install] Erreur 13
  /usr/bin/make install  -- NOT OK
Couldn't install Module::Build, giving up.
BEGIN failed--compilation aborted at ModuleBuildBioperl.pm line 51.
Compilation failed in require at Build.PL line 14.
BEGIN failed--compilation aborted at Build.PL line 14.


--------------------------------------------------
Installation BIOPERL-RUN version bioperl-1.5.2_100 gives:

Manifying blib/lib/Module/Build/Compat.pm ->
blib/libdoc/Module::Build::Compat.3pm
  /usr/bin/make  -- OK
Running make test
/usr/bin/perl Build --makefile_env_macros 1 test
t/basic...............ok
t/compat..............ok
t/destinations........ok
        8/113 skipped: various reasons
t/ext.................ok
t/extend..............ok
t/files...............ok
t/help................ok
t/install.............ok
t/manifypods..........ok
t/mbyaml..............ok
t/metadata............ok
        8/47 skipped: YAML_support feature is not enabled
t/metadata2...........ok
        4/18 skipped: YAML_support feature is not enabled
t/moduleinfo..........ok
t/new_from_context....ok
t/notes...............ok
t/par.................skipped
        all skipped: C_support not enabled
t/parents.............ok
t/pod_parser..........ok
t/ppm.................skipped
        all skipped: C_support not enabled
t/runthrough..........ok
        11/32 skipped: various reasons
t/signature...........skipped
        all skipped: $ENV{TEST_SIGNATURE} is not set
t/test_type...........ok
t/test_types..........ok
t/tilde...............ok
t/versions............ok
t/xs..................skipped
        all skipped: C_support not enabled
All tests successful, 4 tests and 31 subtests skipped.
Files=26, Tests=750, 15 wallclock secs ( 5.65 cusr +  8.28 csys = 13.93 CPU)
  /usr/bin/make test -- OK
Running make install
/usr/bin/perl Build --makefile_env_macros 1 install
mkdir /usr/local/man/man1: Permission non accord�e at
/usr/share/perl/5.8/ExtUtils/Install.pm line 112
make: *** [install] Erreur 13
  /usr/bin/make install  -- NOT OK
Couldn't install Module::Build, giving up.
BEGIN failed--compilation aborted at ModuleBuildBioperl.pm line 51.
Compilation failed in require at Build.PL line 10.
BEGIN failed--compilation aborted at Build.PL line 10.





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