[Bioperl-l] Install help errors

Hilmar Lapp hlapp at gmx.net
Tue Jul 8 20:59:50 EDT 2008

On Jul 8, 2008, at 3:00 PM, snoze pa wrote:

> It always give me a warning
> "insert in Bio::DB::BioSQL::SeqFeatureAdaptor (driver) failed,"

This should be followed by a string similar to "values were (a,b,c,d)  
FKs (1,2,3)" where a, b, c, d are the actual seqfeature values that  
the adaptor tried to bind to the INSERT statement, and 1, 2, and 3  
would be the foreign keys to the bioentry (i.e., the primary key of  
the bioentry to which the seqfeature belongs) and the primary and  
source tag terms. This should be followed by the actual error message  
that was raised by the database driver.

We will need that full error message to have any clue about why that  
feature fails to successfully store. You can identify the sequence  
record to which the feature belongs by issuing the following SQL query:

	sql> SELECT * FROM bioentry WHERE bioentry_id = 123456;

where 123456 is the first actual number between the parentheses  
followed by FK.

: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :

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