[Bioperl-l] Form validating and Bio::Seq objects..

Dave Messina David.Messina at sbc.su.se
Tue Jul 15 03:08:23 EDT 2008


Hi Samantha,
Bio::SeqIO will strip out whitespace and newlines when it reads in a
sequence, but it won't validate the alphabet for you -- you'll need to do
that on your own.

This topic came up on this mailing list recently, and Arshad Mohammed came
up with some draft code to do this. See here:

http://www.nabble.com/Format-Validator-td17444139.html


Dave


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