[Bioperl-l] (no subject)

Dave Messina David.Messina at sbc.su.se
Mon Jul 21 12:31:19 EDT 2008


You know which protein sequence corresponds to which cDNA sequence, so I
think you could also:

- take the start and end coordinates of the domain in the protein (from the
HMMer output)
- convert those into the start and end coordinates of the domain in the cDNA
- use the subseq() method to extract the subsequence of the cDNA


Dave


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