[Bioperl-l] How to input fasta and qual into Bio::Seq::Quality?
cjfields at uiuc.edu
Thu Jul 24 18:18:50 EDT 2008
On Jul 24, 2008, at 5:00 PM, Phillip San Miguel wrote:
> Mark Johnson wrote:
>> I suppose another option would be to convert your seq/qual files to
>> fastq format (See Bio::SeqIO::fastq).
> Or, with prompting from another thread, I now see that
> Bio::SeqIO::phd creates Bio::Seq::Quality objects.
There are a few SeqIO modules which create Bio::Seq::Quality (phd,
scf, ctf, etc). It all depends on which format you want/specify.
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