[Bioperl-l] How to input fasta and qual into Bio::Seq::Quality?

Chris Fields cjfields at uiuc.edu
Thu Jul 24 18:18:50 EDT 2008


On Jul 24, 2008, at 5:00 PM, Phillip San Miguel wrote:

> Mark Johnson wrote:
>> I suppose another option would be to convert your seq/qual files to
>> fastq format (See Bio::SeqIO::fastq).
>>
>>
> Or, with prompting from another thread, I now see that  
> Bio::SeqIO::phd creates Bio::Seq::Quality objects.
>
> Thanks,
> Phillip

There are a few SeqIO modules which create Bio::Seq::Quality (phd,  
scf, ctf, etc).  It all depends on which format you want/specify.

chris


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