[Bioperl-l] Methods to GenBank
jason at bioperl.org
Mon Jul 28 16:45:42 EDT 2008
you want the species method.
see the Seq HowTo on the bioperl wiki -> bioperl.org/wiki for more
detailed info on how to get all the fields out from a seq object.
On Jul 28, 2008, at 1:36 PM, ocar campos wrote:
> I'm building a script to get information from GenBank
> according to some Accession Id, I've looked for a method to
> retrieve the organism lines from the GenBank, but i haven't found
> any specific for this. Does anyone know what is the method for this?
> For example i got this GenBank File:
> LOCUS SLLCP 1058 bp ss-RNA linear
> VRL 16-AUG-1994
> DEFINITION Satellite tobacco mosaic virus coat protein RNA,
> complete cds.
> ACCESSION M25782
> VERSION M25782.1 GI:530201
> KEYWORDS coat protein.
> SOURCE Tobacco necrosis satellite virus
> ORGANISM Tobacco necrosis satellite virus
> Viruses; Satellites; Satellite Viruses.
> REFERENCE 1 (bases 1 to 1058)
> AUTHORS Mirkov,T.E., Mathews,D.M., Du Plessis,D.H. and Dodds,J.A.
> TITLE Nucleotide sequence and translation of satellite
> tobacco mosaic
> virus RNA
> And I want to get the Organism part in my script.
> O'car Campos C.
> Estudiante Ingeniería en Bioinformática
> Universidad de Talca.
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