[Bioperl-l] Phyloxml <alignment>

Han, Mira mirhan at indiana.edu
Tue Jul 29 12:20:33 EDT 2008


Hi,
Sorry for bombarding the list
Thought this would be better on a separate thread.
Phyloxml documents have <phylogeny></phylogeny>s.
But also <align:alignment></align:alignment>s.
What would be the standard approach for parsing,
I guess TreeIO->next_tree
shouldn't take care of the alignments.
Would I need to make a AlignIO->next_aln for the phyloxml document as well?

Mira




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