[Bioperl-l] Phyloxml SeqI without actual sequence

Han, Mira mirhan at indiana.edu
Tue Jul 29 12:13:50 EDT 2008


Another phyloxml parsing question.
We have <Sequence> tags that sometimes have actual molecular sequences and
sometimes don't.
I decided to create a SeqI object and link it to AnnotatableNode.
But when it doesn't have actual sequence
It gives warning that the sequence is empty.
I don't think it's a big problem,
And I'd prefer having consistency than having two different solutions for
the same tag.
But I'd like to hear people's opinion on this as well.
Thank you

Mira Han




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