[Bioperl-l] bioperl 1.6

Brian Osborne bosborne11 at verizon.net
Thu Jul 31 10:37:49 EDT 2008


Chris,

Yes, I volunteered to look at these, and I did take a look. What's not  
clear to me though is if BioRuby is saying these issues are "nice to  
fix" but insubstantial or if they are truly important.

I'd hesitate to call these a block to releasing 1.6 if they don't  
block the use of OBDA, and I have no idea if these "block" anyone over  
at BioRuby or not. To my knowledge these bugs don't appear when one  
uses OBDA with Bioperl.

Specifically, it would be nice to see the code where these bugs show  
themselves.


Brian O.


On Jul 31, 2008, at 10:26 AM, Chris Fields wrote:

> The two foremost in my mind are (1) OBDA compatibility issues  
> between various Bio* (BioRuby, for instance)



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