July 2008 Archives by thread

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Starting: Tue Jul 1 04:19:41 EDT 2008
Ending: Thu Jul 31 23:15:19 EDT 2008
Messages: 210

• [Bioperl-l] re ading in cds, outputting products   Captainrave
  • [Bioperl-l] re ading in cds, outputting products   Captainrave
    • [Bioperl-l] re ading in cds, outputting products   Sendu Bala
• [Bioperl-l] Problems when trying to persist a sequence in my BioSQL database using BioPerl   Gabrielle Doan
• [Bioperl-l] not being able to install Bio-ext-1.4   Pallavi Sarmah
  • [Bioperl-l] not being able to install Bio-ext-1.4   Kevin Brown
    • [Bioperl-l] not being able to install Bio-ext-1.4   Pallavi Sarmah
• [Bioperl-l] Clustalw module   Nathan Haseley (RIT Student)
  • [Bioperl-l] Clustalw module   Jason Stajich
• [Bioperl-l] Clustalw module   Jason Stajich
• [Bioperl-l] finding sequence 2000 bp upstream in bioperl?   RICHARD GREEN
  • [Bioperl-l] finding sequence 2000 bp upstream in bioperl?   Kevin Brown
    • [Bioperl-l] finding sequence 2000 bp upstream in bioperl?   Jason Stajich
  • [Bioperl-l] finding sequence 2000 bp upstream in bioperl?   Brian Osborne
• [Bioperl-l] Install help errors   snoze pa
  • [Bioperl-l] Install help errors   Scott Cain
    • [Bioperl-l] Install help errors   snoze pa
      • [Bioperl-l] Install help errors   Dave Messina
      • [Bioperl-l] Install help errors   Alex Lancaster
      • [Bioperl-l] Install help errors   Sendu Bala
      • [Bioperl-l] Install help errors   Alex Lancaster
      • [Bioperl-l] Install help errors   Chris Fields
      • [Bioperl-l] Install help errors   Alex Lancaster
      • [Bioperl-l] Install help errors   Chris Fields
      • [Bioperl-l] Install help errors   Alex Lancaster
      • [Bioperl-l] Install help errors   Sendu Bala
      • [Bioperl-l] Install help errors   Alex Lancaster
      • [Bioperl-l] Install help errors   Hilmar Lapp
      • [Bioperl-l] Install help errors   snoze pa
      • [Bioperl-l] Install help errors   Hilmar Lapp
      • [Bioperl-l] Install help errors   Sendu Bala
      • [Bioperl-l] Install help errors   snoze pa
      • [Bioperl-l] Install help errors   Hilmar Lapp
      • [Bioperl-l] Install help errors   snoze pa
      • [Bioperl-l] Install help errors   Sendu Bala
      • [Bioperl-l] Install help errors   Hilmar Lapp
      • [Bioperl-l] Install help errors   snoze pa
      • [Bioperl-l] Install help errors   Hilmar Lapp
      • [Bioperl-l] Install help errors   snoze pa
      • [Bioperl-l] Install help errors   snoze pa
      • [Bioperl-l] Install help errors   Chris Fields
      • [Bioperl-l] Install help errors   Chris Fields
      • [Bioperl-l] Install help errors   snoze pa
• [Bioperl-l] IUPAC support for DNA alignment   Alexie Papanicolaou
  • [Bioperl-l] IUPAC support for DNA alignment   Alexie Papanicolaou
    • [Bioperl-l] IUPAC support for DNA alignment   Yee Man Chan
• [Bioperl-l] IUPAC support for DNA alignment   Alexie Papanicolaou
• [Bioperl-l] IUPAC support for DNA alignment   Alexie Papanicolaou
• [Bioperl-l] Memory not sufficient when storing human chromosom 1 in BioSQL   Andreas Dräger
  • [Bioperl-l] Memory not sufficient when storing human chromosom 1 in BioSQL   Chris Fields
    • [Bioperl-l] Memory not sufficient when storing human chromosom 1 in BioSQL   Torsten Seemann
    • [Bioperl-l] Memory not sufficient when storing human chromosom 1 in BioSQL   Sendu Bala
      • [Bioperl-l] Memory not sufficient when storing human chromosom 1 in BioSQL   Chris Fields
    • [Bioperl-l] Memory not sufficient when storing human chromosom 1 in BioSQL   George Hartzell
• [Bioperl-l] Bio::Graphics, circular map   Alper Yilmaz
  • [Bioperl-l] Bio::Graphics, circular map   Torsten Seemann
• [Bioperl-l] install Perl   Tran Trang
  • [Bioperl-l] install Perl   Simon Andrews
    • [Bioperl-l] install Perl   Roy Chaudhuri
      • [Bioperl-l] install Perl   Tran Trang
• [Bioperl-l] Nightly build archives now available   Sendu Bala
  • [Bioperl-l] Nightly build archives now available   Chris Fields
• [Bioperl-l] Nightly build archives now available   Chris Fields
• [Bioperl-l] public qblast servers?   Smithies, Russell
  • [Bioperl-l] public qblast servers?   Cook, Malcolm
• [Bioperl-l] wiki example scripts   Bernd Web
  • [Bioperl-l] wiki example scripts   Jay Hannah
  • [Bioperl-l] wiki example scripts   Mauricio Herrera Cuadra
• [Bioperl-l] Form validating and Bio::Seq objects..   Samantha Thompson
  • [Bioperl-l] Form validating and Bio::Seq objects..   Dave Messina
    • [Bioperl-l] Form validating and Bio::Seq objects..   Samantha Thompson
      • [Bioperl-l] Form validating and Bio::Seq objects..   Simon Andrews
      • [Bioperl-l] Form validating and Bio::Seq objects..   Dave Messina
• [Bioperl-l] Bio::Graphics - several   Alper Yilmaz
  • [Bioperl-l] Re: Bio::Graphics - several   Siddhartha Basu
• [Bioperl-l] parsing of codeml   Chris Fields
• [Bioperl-l] problem - installing bioperl-ext   Leigh Bender
• [Bioperl-l] PHYLIP problem.   #Raul#~~ WeAtHerEd~~
  • [Bioperl-l] PHYLIP problem.   Dave Messina
• [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
  • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Chris Fields
    • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Martin Heusel
    • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Chris Fields
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Martin Heusel
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Martin Heusel
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Chris Fields
• [Bioperl-l] Bioperl   EL KARKOURI Khalid
• [Bioperl-l] PHYLIP problem.   Dave Messina
  • [Bioperl-l] PHYLIP problem.   #Raul#~~ WeAtHerEd~~
• [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
  • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Chris Fields
    • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Chris Fields
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Alicia Amadoz
      • [Bioperl-l] Bio_Tools_Run_RemoteBlast error: 500 Can't connect to www.ncbi.nlm.nih.gov:80   Andreas Kahari
• [Bioperl-l] (no subject)   Dhr. R. de Jonge
  • [Bioperl-l] (no subject)   Dave Messina
    • [Bioperl-l] (no subject)   Dhr. R. de Jonge
      • [Bioperl-l] (no subject)   Dave Messina
      • [Bioperl-l] (no subject)   Ronnie de Jonge
      • [Bioperl-l] (no subject)   Diego Mauricio Riano Pachon
      • [Bioperl-l] (no subject)   Dave Messina
      • [Bioperl-l] (no subject)   Chris Fields
      • [Bioperl-l] (no subject)   Dhr. R. de Jonge
      • [Bioperl-l] (no subject)   Sendu Bala
      • [Bioperl-l] (no subject)   Chris Fields
      • [Bioperl-l] (no subject)   Dhr. R. de Jonge
• [Bioperl-l] bio::graphics:panel track name   Alper Yilmaz
  • [Bioperl-l] bio::graphics:panel track name   Lincoln Stein
• [Bioperl-l] Smaller Bioperl Modules   Nathan.Watson-Haigh at csiro.au
  • [Bioperl-l] Smaller Bioperl Modules   Chris Fields
    • [Bioperl-l] Smaller Bioperl Modules   Nathan.Watson-Haigh at csiro.au
      • [Bioperl-l] Smaller Bioperl Modules   Sendu Bala
      • [Bioperl-l] Smaller Bioperl Modules   Alex Lancaster
      • [Bioperl-l] Smaller Bioperl Modules   Chris Fields
      • [Bioperl-l] Smaller Bioperl Modules   Alex Lancaster
      • [Bioperl-l] Smaller Bioperl Modules   Chris Fields
  • [Bioperl-l] Smaller Bioperl Modules   Hilmar Lapp
    • [Bioperl-l] Smaller Bioperl Modules   Chris Fields
  • [Bioperl-l] Smaller Bioperl Modules   Bernd Web
• [Bioperl-l] Any volunteers for doing a Nested Containment List implementation?   Lincoln Stein
  • [Bioperl-l] Any volunteers for doing a Nested Containment List implementation?   Chris Fields
    • [Bioperl-l] Any volunteers for doing a Nested Containment List implementation?   Lincoln Stein
  • [Bioperl-l] Any volunteers for doing a Nested Containment List implementation?   aaron.j.mackey at gsk.com
• [Bioperl-l] fasta file parser   ste.ghi at libero.it
  • [Bioperl-l] fasta file parser   Sendu Bala
    • [Bioperl-l] fasta file parser   Sendu Bala
  • [Bioperl-l] fasta file parser   Chris Fields
• [Bioperl-l] R: Re: fasta file parser   ste.ghi at libero.it
  • [Bioperl-l] R: Re: fasta file parser   Chris Fields
• [Bioperl-l] R: Re: R: Re: fasta file parser   ste.ghi at libero.it
  • [Bioperl-l] R: Re: R: Re: fasta file parser   Chris Fields
• [Bioperl-l] Installing bioperl-ext on windows   Eileen Heo
• [Bioperl-l] phd format parsing produces infinite memory usage   Jorge.DUARTE at biogemma.com
• [Bioperl-l] Parsing strand and frame for blastx results using SearchIO   michael watson (IAH-C)
  • [Bioperl-l] Parsing strand and frame for blastx results using SearchIO   Roy Chaudhuri
• [Bioperl-l] amino acid composition   Jason Stajich
• [Bioperl-l] MSA2PSSM?   Leon Yee
• [Bioperl-l] retrieve ensembl sequence using bioperl   Laurent Manchon
  • [Bioperl-l] retrieve ensembl sequence using bioperl   Mark Johnson
    • [Bioperl-l] retrieve ensembl sequence using bioperl   Chris Fields
• [Bioperl-l] How to input fasta and qual into Bio::Seq::Quality?   Phillip San Miguel
  • [Bioperl-l] How to input fasta and qual into Bio::Seq::Quality?   Mark Johnson
    • [Bioperl-l] How to input fasta and qual into Bio::Seq::Quality?   Phillip San Miguel
      • [Bioperl-l] How to input fasta and qual into Bio::Seq::Quality?   Chris Fields
• [Bioperl-l] phd format parsing produces infinite memory usage   Jean-Marc FRIGERIO
  • [Bioperl-l] phd format parsing produces infinite memory usage   Phillip San Miguel
    • [Bioperl-l] phd format parsing produces infinite memory usage   Jorge.DUARTE at biogemma.com
      • [Bioperl-l] phd format parsing produces infinite memory usage   Chris Fields
• [Bioperl-l] retrieve ensembl sequence using bioperl   Mark Johnson
• [Bioperl-l] How to get gene offical symbol by geneid and acc number?   Jinyan Huang
• [Bioperl-l] Obtain GO/Gene Names from GNF Probe Names   Edward Wijaya
• [Bioperl-l] Methods to GenBank   ocar campos
  • [Bioperl-l] Methods to GenBank   Jason Stajich
• [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   John M.C. Ma
  • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Chris Fields
  • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Roy Chaudhuri
    • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   John M.C. Ma
• [Bioperl-l] Fwd: Methods to GenBank   Jason Stajich
  • [Bioperl-l] Fwd: Methods to GenBank   ocar campos
• [Bioperl-l] Phyloxml parsing <clade_relation> <sequence_relation>   Han, Mira
  • [Bioperl-l] Phyloxml parsing <clade_relation> <sequence_relation>   aaron.j.mackey at gsk.com
  • [Bioperl-l] Phyloxml parsing <clade_relation> <sequence_relation>   Chris Fields
• [Bioperl-l] Phyloxml SeqI without actual sequence   Han, Mira
  • [Bioperl-l] Phyloxml SeqI without actual sequence   Jason Stajich
    • [Bioperl-l] Phyloxml SeqI without actual sequence   miraceti
      • [Bioperl-l] Phyloxml SeqI without actual sequence   Hilmar Lapp
      • [Bioperl-l] Phyloxml SeqI without actual sequence   Chris Fields
  • [Bioperl-l] Phyloxml SeqI without actual sequence   Chris Fields
• [Bioperl-l] Phyloxml <alignment>   Han, Mira
  • [Bioperl-l] Phyloxml <alignment>   aaron.j.mackey at gsk.com
  • [Bioperl-l] Phyloxml <alignment>   Jason Stajich
    • [Bioperl-l] Phyloxml <alignment>   aaron.j.mackey at gsk.com
    • [Bioperl-l] Phyloxml <alignment>   Arlin Stoltzfus
      • [Bioperl-l] Phyloxml <alignment>   Chris Fields
      • [Bioperl-l] Phyloxml <alignment>   Rutger Vos
• [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Roy Chaudhuri
  • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Chris Fields
    • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Roy Chaudhuri
      • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   John M.C. Ma
      • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Jason Stajich
      • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Chris Fields
      • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Roy Chaudhuri
      • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Chris Fields
      • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   John M.C. Ma
      • [Bioperl-l] Issues on Bio::Tools::Primer3->next_primer   Chris Fields
• [Bioperl-l] Phyloxml SeqI without actual sequence   Jason Stajich
  • [Bioperl-l] Phyloxml SeqI without actual sequence   Hilmar Lapp
• [Bioperl-l] Phyloxml <alignment> - made-up 'align' xml-language   Christian Zmasek
• [Bioperl-l] Phyloxml <alignment> - made-up 'align' xml-language   Han, Mira
• [Bioperl-l] Phyloxml <alignment> - made-up 'align' xml-language 2   Christian Zmasek
  • [Bioperl-l] Phyloxml <alignment> - made-up 'align' xml-language 2   aaron.j.mackey at gsk.com
• [Bioperl-l] get_Seq_by_id: CONTIG found   melody
  • [Bioperl-l] get_Seq_by_id: CONTIG found   ocar campos
    • [Bioperl-l] get_Seq_by_id: CONTIG found   Kevin Brown
      • [Bioperl-l] get_Seq_by_id: CONTIG found   Chris Fields
    • [Bioperl-l] get_Seq_by_id: CONTIG found   Smithies, Russell
• [Bioperl-l] bioperl 1.6   Chris Fields
  • [Bioperl-l] bioperl 1.6   Mauricio Herrera Cuadra
    • [Bioperl-l] bioperl 1.6   Rutger Vos
    • [Bioperl-l] bioperl 1.6   Chris Fields
• [Bioperl-l] bioperl 1.6   Chris Fields
  • [Bioperl-l] bioperl 1.6   Brian Osborne
    • [Bioperl-l] bioperl 1.6   Chris Fields
• [Bioperl-l] $query in Bio::Tools::Run::Alignment   John M.C. Ma
• [Bioperl-l] Bio::Biblio doesn't find articles   Bruno Vecchi

Last message date: Thu Jul 31 23:15:19 EDT 2008
Archived on: Thu Jul 31 23:22:11 EDT 2008

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