[Bioperl-l] How to extract list of SNPs for a given gene?

bill at genenformics.com bill at genenformics.com
Sun Jun 1 00:28:04 EDT 2008


Hi, Abhijit,

Gene2Snp, a standalone application which find SNPs for given Entrez Genes,
can be freely downloaded from
http://www.genenformics.com/download.html

A sample output is available at
http://www.genenformics.com/Gene2Snp_example_result.txt

This application may consume lots of CPU/memory due to complexity of locus
region.

Bill at genenformics.com

> From: artendulkar at gmail.com [mailto:artendulkar at gmail.com]
> Sent: Tuesday, May 20, 2008 4:21 PM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] How to extract list of SNPs for a given gene?
>
> Hi,
> Can anyone please tell me how to get list of SNPs in any particular gene
> using BioPerl, given NCBI Gene ID?
> Is there any method, which takes NCBI gene ID as argument and returns
> list
> of SNPs by connecting to dbSNP?
> Thank you.
> Abhijit
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> Bioperl-l at lists.open-bio.org
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