[Bioperl-l] Fwd: BPlite

Chris Fields cjfields at uiuc.edu
Sun Jun 1 12:51:38 EDT 2008


The problem is BPLite has been officially deprecated in favor of  
Bio::SearchIO BLAST parsing (including Sendu's BLAST-based pull  
parser).  If there is interest in resurrecting BPLite we would need  
someone to actively maintain it.

chris

On May 31, 2008, at 4:53 PM, Jason Stajich wrote:

>
>
> Begin forwarded message:
>
>> From: Anatoly Urisman <urisman at gmail.com>
>> Date: May 31, 2008 5:08:03 AM CDT
>> To: jason...
>> Subject: BPlite
>>
>> Hi Jason,
>> I was wondering if you are aware of a fix to the BPlite.pm module  
>> that supports the new NCBI blastall output (i.e. reports are not  
>> delimited by something like BLASTN 2.2.8 [Jan-05-2004]).
>> Thanks.
>> Anatoly Urisman, MD-PhD
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Marie-Claude Hofmann
College of Veterinary Medicine
University of Illinois Urbana-Champaign






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