[Bioperl-l] How to get protein ID and get protein accession from GI

Ousmane Diallo ousmane.diallo at crchum.qc.ca
Tue Jun 3 17:21:42 EDT 2008


hello,
Could somebody help me on how to get the protein ID and ACCESSION using the mRNA gi or accession.


my $db_obj = Bio::DB::GenBank->new();    
my $seq_obj = $db_obj->get_Seq_by_acc('123456') ;   # I pass here the mrna acc to get the seq_obj
my $gi = $seq_obj->primary_id ;                     # I get here the gi


I need to get the protein ID and protein ACCESSION"

THANKS!!



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