[Bioperl-l] Bio::Tools::Run::Genemark

Chris Fields cjfields at uiuc.edu
Thu Jun 19 17:36:40 EDT 2008

Just committed the patch to svn, so updating the local bioperl-run  
from subversion should work.


On Jun 19, 2008, at 4:29 PM, Mark Johnson wrote:

> It seems that GeneMark.hmm returns 0 even when the license is expired.
> You can probably guess how I discovered this.  I created a bug and
> attached a fix:
>  http://bugzilla.open-bio.org/show_bug.cgi?id=2523
> If you've built Bio::Tools::Run::Genemark into a gene prediction
> pipeline (as I have), you really want this fix.  Otherwise, if your
> license expires, you may not realize it until you wonder why GeneMark
> has suddenly stopped predicting genes...
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