[Bioperl-l] HMMER - Parse hmmpfam output using bioperl - help!!
shameer at ncbs.res.in
Thu May 8 08:31:22 EDT 2008
Thanks for your quick reply. This is really useful.
Separately, One quick question, I dont have hmmer_pull.pm. I am using an
older version of Bioperl. Is there any provision to to download and
install individual bioperl modules separately ?
> You'll find the relevant documentation under Bio::Search::Result,
> Bio::Search::Hit and Bio::Search::HSP.
> Using Bio::SearchIO->new(-format => 'hmmer_pull') will also give you a
> faster parser that may behave more closely to your expectation during
> your loops.
> Anyway, there are various obvious-named methods you can use:
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