[Bioperl-l] [BioPython] Parsing the pairwise alignments from the FASTA tool

Chris Fields cjfields at uiuc.edu
Fri May 16 11:32:44 EDT 2008


Peter,

An enhancement request is in place in bugzilla for this, but BioPerl  
hasn't implemented parsing -m10 yet.  As you indicated this shouldn't  
be too hard to implement; just needs someone with the time to code it  
up.

chris

On May 16, 2008, at 10:10 AM, Peter wrote:

> ...
> P.S. For anyone interested, BioPerl have had support for the human
> readable FASTA output for a while, and judging from this thread, they
> added support for the FASTA m10 variant last year:
> http://bioperl.org/pipermail/bioperl-l/2007-April/025465.html
> _______________________________________________
> BioPython mailing list  -  BioPython at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biopython

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Marie-Claude Hofmann
College of Veterinary Medicine
University of Illinois Urbana-Champaign






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