[Bioperl-l] Bio::Align::DNAStatistics

Jason Stajich jason at bioperl.org
Fri May 16 19:15:44 EDT 2008


Sounds like an old bioperl version mixture, but I'm not sure, you'll  
need to let us know what version of bioperl you have installed.

Please include the mailing list in these types of questions so others  
can help.

-jason
On May 15, 2008, at 1:49 PM, Steve Beckstrom-Sternberg wrote:

> Hi Jason,
>
> I have bioperl-run installed and I am testing pairwise_kaks.PLS.
> I am getting an error from Clustalw.pm, and it looks like this is  
> because
> subroutine “new” is calling a subroutine that is not there  
> (_set_from_args).
>
> Here is the error:
>
> ./pairwise_kaks.PLS
> Can't locate object method "_set_from_args" via package
> "Bio::Tools::Run::Alignment::Clustalw" at
> /usr/lib/perl5/site_perl/5.8.8/Bio/Tools/Run/Alignment/Clustalw.pm  
> line 409.
>
> Here is the version of Clustalw.pm:
> # $Id: Clustalw.pm,v 1.53 2007/06/14 15:23:08 sendu Exp $
>
>
> Any direction on how to resolve this?
>
> Thanks,
>
> Steve
>
>



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