[Bioperl-l] SearchIO: write/read database

Chu, Roy RChu at coh.org
Tue May 20 03:09:56 EDT 2008


I tried a mailing-list and module search, but I couldn't find what I was looking for--but I know it's there.

On the bioperl page (http://www.bioperl.org/wiki/HOWTO:SearchIO#Writing_and_formatting_output) it says:
"If your data is instead stored in a database you could build the Bio::Search objects up in memory directly from your database and then use the Writer object to output the data."

I want to write/read BLAST results to a database w/o having to write to files or parse any xml.  Can someone direct me to any available module(s) that will help me in my endeavor?

Thanks in advance,

This message and any attachments are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wish to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender.  


More information about the Bioperl-l mailing list