[Bioperl-l] I can't access clustalw from my cgi perl program...

Sendu Bala bix at sendu.me.uk
Wed May 21 17:02:08 EDT 2008


vdar at yorku.ca wrote:
> How can I find where bioperl is installed?

You already know where it's installed. See below.


> Quoting Mauricio Herrera Cuadra <arareko at campus.iztacala.unam.mx>:
> 
>> Hi Nisa,
>>
>> CGI scripts are generally run by a different user than you, and which
>> user (e.g. apache, nobody) will depend on the platform you're running
>> the script on, thus the environment variables you currently have for
>> your login shell are not being inherited to the web interface. The best
>> workaround for this is to add a 'use lib' pragma at the top of your CGI
>> script:
>>
>> use lib '/path/to/your/bioperl/installation/';
[...]
>> vdar at yorku.ca wrote:
>>> export PERL5LIB="/opt/rocks/lib/perl5/site_perl/5.8.8"


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