[Bioperl-l] quick question about Yn00.pm

Jason Stajich jason at bioperl.org
Thu May 22 00:09:28 EDT 2008


please email the list with questions as well.

The program is called yn00 so I don't know what you get that message.

Did you actually install PAML? what does 'which yn00' say?
Did you specify the path to the executable with
$yn->executable('/path/to/yn00');

-jason
On May 21, 2008, at 4:25 PM, zhuangli liang wrote:

> Dear Jason,
>
> I am really sorry to bother you at this email address, but I am  
> working on a project and really need to run the KaKs calculation  
> urgently. I am using your Yn00.pm module as in  
> Bio::Tools::Run::Phylo::PAML::Yn00, which I installed from bioperl- 
> run-1.4.
>
> When I run the example script given in the Synopsis of Yn00.pm,  I  
> got the following error:
> ------------- EXCEPTION  -------------
> MSG: unable to find executable for 'yn'
> STACK Bio::Tools::Run::Phylo::PAML::Yn00::run Yn00.pm:265
> STACK toplevel test.pl:13
>
> Could you please give me some suggestions to make it work?  Thanks  
> a lot!!!
> I am using perl, v5.8.8 built for i386-linux-thread-multi.
>
> Zhuangli
>



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