[Bioperl-l] FASTA format check

Edward Wijaya ewijaya at gmail.com
Thu May 22 04:22:55 EDT 2008


Yes there is. Check this out:

http://search.cpan.org/~birney/bioperl-1.4/Bio/Tools/GuessSeqFormat.pm

- Edward

On Thu, May 22, 2008 at 5:07 PM, Zhi-Qiang Ye <yezhiqiang at gmail.com> wrote:
> Dear all,
>
>      I was looking for a module or library for the check of FASTA
> format.  I have a program taking FASTA format protein sequence as
> input.
> If the user provides invalid input, the program has to check it and
> output friendly error messeges.  Is there any packages or modules with
> these functionalities?
>
>     Thank you very much!
>
> Best Regards!
> --
> Zhi-Qiang Ye
> Ph.D in Bioinformatics
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>


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