[Bioperl-l] FASTA format check
yezhiqiang at gmail.com
Thu May 22 05:06:25 EDT 2008
Thanks, Edward and Fabian.
The Guess module is for guessing formats of valid input, which is not
As for my testing,
>protein\nAAAAAAAAAAAAAAAAAAAAAAAAAAaaa ==> fasta
>proteinAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ==> fasta
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa ==> undefined value
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ==> raw
so, what I need is not this one.
2008/5/22 Edward Wijaya <ewijaya at gmail.com>:
> Yes there is. Check this out:
> - Edward
> On Thu, May 22, 2008 at 5:07 PM, Zhi-Qiang Ye <yezhiqiang at gmail.com> wrote:
>> Dear all,
>> I was looking for a module or library for the check of FASTA
>> format. I have a program taking FASTA format protein sequence as
>> If the user provides invalid input, the program has to check it and
>> output friendly error messeges. Is there any packages or modules with
>> these functionalities?
>> Thank you very much!
>> Best Regards!
>> Zhi-Qiang Ye
>> Ph.D in Bioinformatics
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
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