[Bioperl-l] FASTA format check

Sendu Bala bix at sendu.me.uk
Thu May 22 06:08:17 EDT 2008


Dave Messina wrote:
> I don't think there's something like this in BioPerl (strangely -- I would
> have thought Bio::SeqIO would have some validate() method. Perhaps if you
> turn on debugging  or verbosity flags?). Someone who knows The Truth will
> probably chime in here.

BioPerl doesn't validate. It's on the project priority list though:
http://www.bioperl.org/wiki/Project_priority_list#Parsing_code (number 7)



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