[Bioperl-l] RepeatMasker not found

Sendu Bala bix at sendu.me.uk
Thu May 22 12:12:59 EDT 2008


nisa_dar wrote:
> ok now I have installed repeat masker, with its prerequisites as given on 
> http://www.repeatmasker.org/
> but now I am getting this error message. 
> 
> RepeatMasker program not found as  or not executable. 
> 
> what should I do?

Well now you have to correct your code to tell it where you installed 
RepeatMasker:


>> On May 13, 2008, at 1:59 PM, nisa_dar wrote:
[...]
>>> BEGIN {
>>>
>>> 	$ENV{REPEATMASKERDIR} = '/opt/rocks/lib/perl5/site_perl/5.8.8/Bio/Tools/';
>>>
>>>  }


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