[Bioperl-l] Re peatMasker not found

nisa_dar vdar at yorku.ca
Thu May 22 12:59:19 EDT 2008


please see my full message and all the approaches that i have been doing to
tell my pogram where repeat masker is...what else is correct if these are
not?




Sendu Bala-2 wrote:
> 
> nisa_dar wrote:
>> ok now I have installed repeat masker, with its prerequisites as given on 
>> http://www.repeatmasker.org/
>> but now I am getting this error message. 
>> 
>> RepeatMasker program not found as  or not executable. 
>> 
>> what should I do?
> 
> Well now you have to correct your code to tell it where you installed 
> RepeatMasker:
> 
> 
>>> On May 13, 2008, at 1:59 PM, nisa_dar wrote:
> [...]
>>>> BEGIN {
>>>>
>>>> 	$ENV{REPEATMASKERDIR} =
>>>> '/opt/rocks/lib/perl5/site_perl/5.8.8/Bio/Tools/';
>>>>
>>>>  }
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> 
> 

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