[Bioperl-l] Re peatMasker not found

Florent Angly florent.angly at gmail.com
Thu May 22 13:10:12 EDT 2008


The path that you set up for $ENV{REPEATMASKERDIR} should be the path to 
the RepeatMasker program executable, not the path to the ReapeatMasker 
BioPerl module.
Florent

nisa_dar wrote:
> please see my full message and all the approaches that i have been doing to
> tell my pogram where repeat masker is...what else is correct if these are
> not?
>
>
>
>
> Sendu Bala-2 wrote:
>   
>> nisa_dar wrote:
>>     
>>> ok now I have installed repeat masker, with its prerequisites as given on 
>>> http://www.repeatmasker.org/
>>> but now I am getting this error message. 
>>>
>>> RepeatMasker program not found as  or not executable. 
>>>
>>> what should I do?
>>>       
>> Well now you have to correct your code to tell it where you installed 
>> RepeatMasker:
>>
>>
>>     
>>>> On May 13, 2008, at 1:59 PM, nisa_dar wrote:
>>>>         
>> [...]
>>     
>>>>> BEGIN {
>>>>>
>>>>> 	$ENV{REPEATMASKERDIR} =
>>>>> '/opt/rocks/lib/perl5/site_perl/5.8.8/Bio/Tools/';
>>>>>
>>>>>  }
>>>>>           
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>>
>>     
>
>   



More information about the Bioperl-l mailing list