[Bioperl-l] Re peatMasker not found

Mauricio Herrera Cuadra arareko at campus.iztacala.unam.mx
Thu May 22 13:39:23 EDT 2008


Sendu already pointed it out: $ENV{REPEATMASKER} needs to be changed. 
RepeatMasker docs must have some info on where it was installed 
depending on your platform, use `which` otherwise.

Mauricio.

nisa_dar wrote:
> please see my full message and all the approaches that i have been doing to
> tell my pogram where repeat masker is...what else is correct if these are
> not?
> 
> 
> 
> 
> Sendu Bala-2 wrote:
>> nisa_dar wrote:
>>> ok now I have installed repeat masker, with its prerequisites as given on 
>>> http://www.repeatmasker.org/
>>> but now I am getting this error message. 
>>>
>>> RepeatMasker program not found as  or not executable. 
>>>
>>> what should I do?
>> Well now you have to correct your code to tell it where you installed 
>> RepeatMasker:
>>
>>
>>>> On May 13, 2008, at 1:59 PM, nisa_dar wrote:
>> [...]
>>>>> BEGIN {
>>>>>
>>>>> 	$ENV{REPEATMASKERDIR} =
>>>>> '/opt/rocks/lib/perl5/site_perl/5.8.8/Bio/Tools/';
>>>>>
>>>>>  }
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>>
> 

-- 
MAURICIO HERRERA CUADRA
arareko at campus.iztacala.unam.mx
Laboratorio de Genética
Unidad de Morfofisiología y Función
Facultad de Estudios Superiores Iztacala, UNAM


More information about the Bioperl-l mailing list