[Bioperl-l] Get genes/annotations associated with a probe

Arkady bamboowarrior at gmail.com
Mon May 26 16:18:05 EDT 2008


Hi everyone,

I've got a list of genomic positions (e.g., the coordinates used by UCSC)
for transcribed fragments from a microarray. Is there a simple way to get a
list of annotations for those regions using bioperl? e.g., every annotation
that spans the entire length of the transfrag, or 80% of it; or annotations
that overlap the transfrag?

Thanks in advance!

Cheers,
John Woods

--
Institute for Cellular and Molecular Biology
The University of Texas at Austin


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