[Bioperl-l] Re trieving all genes of a species from DBBJ/GENBANK using Perl SOAP

Chris Fields cjfields at illinois.edu
Sun Nov 16 11:41:58 EST 2008


Not sure if this is related to bioperl specifically.  Is there any  
particular you are using DDBJ over EMBL or GenBank?

I would probably go about this using Bio::DB::GenBank,  
Bio::DB::EntrezGene, or similar in combination with a GenBank query  
(Bio::DB::Query::GenBank); see the relevant module POD for details.


On Nov 16, 2008, at 9:58 AM, tomas_bar wrote:

> Hi,
> I’m using Perl to query DBBJ using SOAP.
> I want to find all genes of  a given species in the database.
> However, the different SOAP services available like GetEntry only  
> allow you
> to retrieve records by accession number.
> Do you know how I could find all genes of a species?
> Thank you very much.
> -- 
> View this message in context: http://www.nabble.com/Retrieving-all-genes-of-a-species-from-DBBJ-GENBANK-using-Perl-SOAP-tp20520856p20520856.html
> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

More information about the Bioperl-l mailing list