[Bioperl-l] general coordinate transformation in LocatableSeq

Mark A. Jensen maj at fortinbras.us
Fri Nov 28 10:34:26 EST 2008

It's likely it could help, since one of Bert's tweaks was to fix a wrong transformation. I will dig into it.
  ----- Original Message ----- 
  From: Dave Messina 
  To: Mark A. Jensen 
  Cc: BioPerl List ; Chris Fields 
  Sent: Friday, November 28, 2008 3:33 AM
  Subject: Re: [Bioperl-l] general coordinate transformation in LocatableSeq

  I wonder if this would be useful for sorting out the subsequence issues that we've seen in Bio::Search::SearchUtils::tile_hsps, Bio::Search::Hit::GenericHit::length_aln, et al. (e.g. Bug 2476 ).

  Not for release 1.6, but a 1.6.x point release perhaps.


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