[Bioperl-l] SeqIO-based parser for Vector NTI sequence files

Scott Markel smarkel at accelrys.com
Tue Oct 21 16:49:21 EDT 2008


I'm looking for a BioPerl-related solution to parsing Vector NTI
sequence files.  The genbank.pm parser will work, but it doesn't
parse the COMMENT lines beyond grabbing the simple string value,
so it misses all of the added information in those lines.

If you know of any existing code, I'd be interesting in hearing
about it.  I checked BioPerl, BioJava, and EMBOSS documentation.
I also checked the Invitrogen web site.

Scott

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Scott Markel, Ph.D.
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