[Bioperl-l] (no subject)

Corbo, Joseph jcorbo at pathology.wustl.edu
Thu Oct 23 16:35:57 EDT 2008


Greetings.  I am trying to install Bioperl on my Windows XP machine and
am having a problem I would greatly appreciate some help with.  I am
following the directions for installing Bioperl as given on the Bioperl
website page "Installing Bioperl on Windows" under the section
"Installation using the Perl Package Manager".  I added the three new
repositories (http://bioperl.org/DIST/ etc.) as they instruct.  Then
when I try to install Bioperl either using the GUI installation or the
command line sequence "ppm-shell, search bioperl, install [number]" I
get the following error message which I don't know how to fix:

 

WARNING: Can't find any package that provides DB_File:: for
Bundle-BioPerl-Core

 

bioperl depends on Bundle-BioPerl-Core

bioperl depends on SVG

bioperl depends on GD-SVG

bioperl depends on Spreadsheet-ParseExcel

bioperl depends on XML-SAX

bioperl depends on AcePerl

bioperl depends on XML-SAX-ExpatXS

bioperl depends on SOAP-Lite

bioperl depends on SVG-Graph

bioperl depends on Bio-ASN1-EntrezGene

bioperl depends on XML-XPath

bioperl depends on Convert-Binary-C

bioperl depends on XML-Twig

bioperl depends on Set-Scalar

bioperl depends on Text-Shellwords

bioperl depends on Data-Stag

bioperl depends on libxml-perl

bioperl depends on XML-Writer

bioperl depends on Graph

bioperl depends on Class-AutoClass

bioperl depends on Clone

bioperl depends on XML-DOM-XPath

bioperl depends on IO-stringy

bioperl depends on OLE-Storage_Lite

bioperl depends on XML-NamespaceSupport

bioperl depends on Cache-Cache

bioperl depends on MIME-Lite

bioperl depends on Math-Derivative

bioperl depends on Math-Spline

bioperl depends on Statistics-Descriptive

bioperl depends on Tree-DAG_Node

bioperl depends on Heap

bioperl depends on Test-Deep

bioperl depends on XML-DOM

bioperl depends on XML-XPathEngine

bioperl depends on Error

bioperl depends on Email-Date-Format

bioperl depends on MIME-Types

bioperl depends on MailTools

bioperl depends on Test-Tester

bioperl depends on Test-NoWarnings

bioperl depends on XML-RegExp

bioperl depends on Test-Pod

bioperl depends on TimeDate

 

 

Any thoughts on how to fix this?  Thanks, Joe Corbo

 




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