[Bioperl-l] Need help installing Bioperl on Windows

Kevin Brown Kevin.M.Brown at asu.edu
Thu Oct 23 18:51:31 EDT 2008


Which version of Perl did you install from Activestate?

I have 5.8.8.820 and DB_File is provided by the Activestate repository. 

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org 
> [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of 
> Corbo, Joseph
> Sent: Thursday, October 23, 2008 1:47 PM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Need help installing Bioperl on Windows
> 
> Greetings.  I am trying to install Bioperl on my Windows XP 
> machine and
> am having a problem I would greatly appreciate some help with.  I am
> following the directions for installing Bioperl as given on 
> the Bioperl
> website page "Installing Bioperl on Windows" under the section
> "Installation using the Perl Package Manager".  I added the three new
> repositories (http://bioperl.org/DIST/ etc.) as they instruct.  Then
> when I try to install Bioperl either using the GUI installation or the
> command line sequence "ppm-shell, search bioperl, install [number]" I
> get the following error message which I don't know how to fix:
> 
>  
> 
> WARNING: Can't find any package that provides DB_File:: for
> Bundle-BioPerl-Core
> 
>  
> 
> bioperl depends on Bundle-BioPerl-Core
> 
> bioperl depends on SVG
> 
> bioperl depends on GD-SVG
> 
> bioperl depends on Spreadsheet-ParseExcel
> 
> bioperl depends on XML-SAX
> 
> bioperl depends on AcePerl
> 
> bioperl depends on XML-SAX-ExpatXS
> 
> bioperl depends on SOAP-Lite
> 
> bioperl depends on SVG-Graph
> 
> bioperl depends on Bio-ASN1-EntrezGene
> 
> bioperl depends on XML-XPath
> 
> bioperl depends on Convert-Binary-C
> 
> bioperl depends on XML-Twig
> 
> bioperl depends on Set-Scalar
> 
> bioperl depends on Text-Shellwords
> 
> bioperl depends on Data-Stag
> 
> bioperl depends on libxml-perl
> 
> bioperl depends on XML-Writer
> 
> bioperl depends on Graph
> 
> bioperl depends on Class-AutoClass
> 
> bioperl depends on Clone
> 
> bioperl depends on XML-DOM-XPath
> 
> bioperl depends on IO-stringy
> 
> bioperl depends on OLE-Storage_Lite
> 
> bioperl depends on XML-NamespaceSupport
> 
> bioperl depends on Cache-Cache
> 
> bioperl depends on MIME-Lite
> 
> bioperl depends on Math-Derivative
> 
> bioperl depends on Math-Spline
> 
> bioperl depends on Statistics-Descriptive
> 
> bioperl depends on Tree-DAG_Node
> 
> bioperl depends on Heap
> 
> bioperl depends on Test-Deep
> 
> bioperl depends on XML-DOM
> 
> bioperl depends on XML-XPathEngine
> 
> bioperl depends on Error
> 
> bioperl depends on Email-Date-Format
> 
> bioperl depends on MIME-Types
> 
> bioperl depends on MailTools
> 
> bioperl depends on Test-Tester
> 
> bioperl depends on Test-NoWarnings
> 
> bioperl depends on XML-RegExp
> 
> bioperl depends on Test-Pod
> 
> bioperl depends on TimeDate
> 
>  
> 
>  
> 
> Any thoughts on how to fix this?  Thanks, Joe Corbo
> 
>  
> 
> 
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