[Bioperl-l] SeqHound

Raul Mendez Giraldez raulmendez at cbm.uam.es
Wed Sep 3 10:33:46 EDT 2008


Hi Chris,

I'm trying to set up and run bioperl Seqhound donwloaded from:

http://bond.unleashedinformatics.com/downloads/api//seqhound-bioperl-4.0.tar.gz

and I always get connection error messages. Do you know which version of
SeqHound should I use and how can I configure to make it work? I've
tried several possibilities for server1 at .shoundremrc as

[remote]
server1 = bond.unleashedinformatics.com
CGI = /cgi-bin/seqrem
port=8080

Also, I would like to get all the possible protein-protein interaction
for a set of protein sequences. Would this be possible using SeqHound?

Thanks,
Raúl




-- 
Raúl Méndez Giráldez, Ph.D.
Bioinformatics Unit
Centre for Molecular Biology "Severo Ochoa"
Universidad Autónoma de Madrid
C/ Nicolás Cabrera, 1
Cantoblanco 28049, Madrid
SPAIN

Phone: +34 91 196 4633




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