bosborne11 at verizon.net
Tue Sep 9 10:50:38 EDT 2008
After spending a few minutes at bond.unleashedinformatics.com I have
to admit that it's not clear how one accesses their free version of
BOND. There are no examples that I can see in their packages.
If you are interested in looking at protein-protein networks in the
Bioperl context you can also check out the bioperl-network package:
If you don't care what language you're using then you should consider
Cytoscape, it's probably the package with the most capability.
On Sep 3, 2008, at 10:33 AM, Raul Mendez Giraldez wrote:
> Hi Chris,
> I'm trying to set up and run bioperl Seqhound donwloaded from:
> and I always get connection error messages. Do you know which
> version of
> SeqHound should I use and how can I configure to make it work? I've
> tried several possibilities for server1 at .shoundremrc as
> server1 = bond.unleashedinformatics.com
> CGI = /cgi-bin/seqrem
> Also, I would like to get all the possible protein-protein interaction
> for a set of protein sequences. Would this be possible using SeqHound?
> Raúl Méndez Giráldez, Ph.D.
> Bioinformatics Unit
> Centre for Molecular Biology "Severo Ochoa"
> Universidad Autónoma de Madrid
> C/ Nicolás Cabrera, 1
> Cantoblanco 28049, Madrid
> Phone: +34 91 196 4633
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
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