[Bioperl-l] [Gmod-gbrowse] exporting contigs with CDSes, stored via Bio::DB::GFF, into individual GenBank records?
gilbertd at cricket.bio.indiana.edu
Tue Sep 30 13:23:56 EDT 2008
If the Bio::DB::GFF database to Genbank submission route doesn't get you
where you want, you can also look at storing your data in a GMOD Chado
database, then using Bulkfiles to produce the Genbank Submission file set.
- Don Gilbert
Find a GenBank Submit output from Chado dbs in this tool release
- adding (in progress) Genbank Submission table writer,
'bulkfiles -format=genbanktbl', with output suited
to submit to NCBI as per these specifications
see also http://gmod.org/wiki/GMODTools
and this test case with genbank-submit output
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