[Bioperl-l] [Gmod-gbrowse] exporting contigs with CDSes, stored via Bio::DB::GFF, into individual GenBank records?

Don Gilbert gilbertd at cricket.bio.indiana.edu
Tue Sep 30 13:23:56 EDT 2008


If the Bio::DB::GFF database to Genbank submission route doesn't get you
where you want, you can also look at storing your data in a GMOD Chado
database, then using Bulkfiles to produce the Genbank Submission file set.

- Don Gilbert

Find a GenBank Submit output from Chado dbs in this tool release
  GMODTools-1.2b.zip      20-Jun-2008 

- adding (in progress) Genbank Submission table writer, 
  'bulkfiles -format=genbanktbl', with output suited
  to submit to NCBI as per these specifications

see also http://gmod.org/wiki/GMODTools
and this test case with genbank-submit output

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