[Bioperl-l] Pasing Affymatrix Microarray output
cjfields at illinois.edu
Fri Apr 10 00:32:59 EDT 2009
Would definitely be worth testing out interactivity with these.
On Apr 8, 2009, at 12:59 AM, Steve Chervitz wrote:
> Check out our Affymetrix Power Tools (APT) package:
> We distribute binaries for Linux and Mac OSX, as well as source code
> so you can compile it yourself if you want. Note however that this is
> written in C++, not Perl. We don't provide SWIG or XS interfaces for
> direct access via Perl, though this would definitely be doable, if
> anyone is interested.
> Probably the easiest approach from Perl would be to simply call the
> appropriate APT executable through the shell as in:
> system("/path/to/apt --args ...");
> The Perl code can parse the output files and take it from there.
> On Tue, Apr 7, 2009 at 7:10 PM, Sean Davis <sdavis2 at mail.nih.gov>
>> On Tue, Apr 7, 2009 at 9:39 PM, Wen-Zhi WANG <wenzhiwang1983 at yahoo.com.cn
>>> Dear all,
>>> Recently, I focus on population genomics data outputed by affymatrix
>>> microarray system. However, softwares which designed by affy. inc
>>> only run
>>> in Windows 386 platform. Is there any application can used in Linux?
>>> Bio::Affymatrix was not strong enough to get the detailed
>> You may want to look at a non-bioperl solution such as Bioconductor (
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