[Bioperl-l] Bio::SeqIO::staden::read make test error
roy.chaudhuri at gmail.com
Tue Apr 14 10:54:21 EDT 2009
I did get that problem solved in the end, thanks to lots of help from
Aaron Mackey. Looking at the bioperl-l archives it seems like we stopped
cc-ing the mailing list at some point. The last archived message in the
thread (http://bioperl.org/pipermail/bioperl-l/2005-May/018925.html) had
the correct solution - the code change was incorporated into the
bioperl-ext CVS, and is in the latest version that you can get from SVN
(see http://www.bioperl.org/wiki/Ext_package). If that doesn't solve the
problem you must be experiencing a different issue.
You should also bear in mind the message Chris Fields sent to the list a
few days ago, and have a look at using BioLib instead:
> Just to note, we're not actively supporting much of the bioperl-ext
> code, in favor of the BioLib initiative:
> If you do use bioperl-ext I suggest only using the latest code from
> svn (and that in combination with bioperl-live).
Hope this helps.
Michael Stubbington wrote:
> Dear Dr. Chaudhuri,
> I am currently trying to write a bioperl script that parses .abi
> sequence files. I am having exactly the same problem as you did when
> you posted this enquiry to the bioperl mailing list
> http://bioperl.org/pipermail/bioperl-l/2005-May/018898.html. I was
> wondering if you ever solved the problem and, if so, can you remember
> what you did? I’d be very grateful for any help you can provide. I
> can’t find this problem mentioned anywhere else online.
> Thank you for your time.
Dr. Roy Chaudhuri
Department of Veterinary Medicine
University of Cambridge, U.K.
More information about the Bioperl-l