[Bioperl-l] use CLUSTALW on Windows?

Jon Flowers jonathanmflowers at gmail.com
Thu Apr 30 12:52:24 EDT 2009


There is no means to do this in bioperl, but it is simple to make a system
call and execute an MSA program such as MUSCLE to align fasta-formatted
sequences using something like...

qx(muscle -in $infilename -out $outfilename)  


laxmanb wrote:
> I need to create a multiple sequence alignment of some sequences using
> CLUSTALW or any other Multiple sequence alignment program. However, I've
> learnt that this functionality used to be UNIX/Linux only. However, the
> documentation is also very old, so I'd like to know if any CLUSTAL/ any
> other MSA programs can be run using BioPerl on Windows.
> Thank you for your time :)

View this message in context: http://www.nabble.com/use-CLUSTALW-on-Windows--tp23264714p23320232.html
Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.

More information about the Bioperl-l mailing list