[Bioperl-l] how to map ensembl id to NCBI gi

Chris Fields cjfields at illinois.edu
Wed Dec 9 20:59:37 EST 2009


Probably best to do this via BioMart:


I would assume you can also do this via the ensembl perl API as well.

Also, have a look at the UniProt ID Mapper:



On Dec 9, 2009, at 6:36 PM, Tom Keller wrote:

> Greetings,
> Is there a simple way to map a list of ensembl ids to the NCBI gis?
> thanks,
> Tom
> Thomas (Tom) Keller
> kellert at ohsu.edu
> 503.494.2442
> 6339b R Jones Hall (BSc/CROET)
> www.ohsu.edu/xd/research/research-cores/dna-analysis/
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