[Bioperl-l] NCBI BlastPlus wrapper for your enjoyment

Chris Fields cjfields at illinois.edu
Sat Dec 19 17:44:46 EST 2009

Very nice!  We'll definitely give it a try here (along with the requisite feedback, of course).


On Dec 19, 2009, at 1:52 PM, Mark A. Jensen wrote:

> Hi All, 
> Your full-service BLAST wrapper, Bio::Tools::Run::StandAloneBlastPlus,
> is at beta in the bioperl-run trunk. It wraps all the programs of the 
> NCBI's new blast+-2.2.22 suite 
> ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
> and integrates them, allowing you to create, mask, and query 
> databases from within a single factory object. See the HOWTO
> http://www.bioperl.org/wiki/HOWTO:BlastPlus
> for the usual usage and implementation details.
> Happy coding--
> MAJ 
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