December 2009 Archives by date

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Starting: Tue Dec 1 05:14:40 EST 2009
Ending: Thu Dec 31 05:55:32 EST 2009
Messages: 160

[Bioperl-l] [Bug 2937] Strand in fasta35 output does not seem to be parsed Dave Messina
[Bioperl-l] Statistics: how to obtain the p value of a T test Emanuele Osimo
[Bioperl-l] Fwd: [Utilities-announce] NCBI E-Utility Policy Change Chris Fields
[Bioperl-l] test test test Mark A. Jensen
[Bioperl-l] test test test Ocar Campos
[Bioperl-l] test test test Mark A. Jensen
[Bioperl-l] Problems with installation Vipin Singh
[Bioperl-l] Remote blast Roopa Raghuveer
[Bioperl-l] Problems with installation Mark A. Jensen
[Bioperl-l] Problems with installation Scott Cain
[Bioperl-l] Parsing Genbank Brandi Cantarel
[Bioperl-l] Parsing Genbank Mark A. Jensen
[Bioperl-l] Parsing Genbank Brandi Cantarel
[Bioperl-l] Parsing Genbank Chris Fields
[Bioperl-l] Parsing Genbank Mark A. Jensen
[Bioperl-l] Parsing Genbank Mark A. Jensen
[Bioperl-l] Parsing Genbank Chris Fields
[Bioperl-l] modENCODE seeking data managers Lincoln Stein
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Dan Bolser
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Peter
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Dan Bolser
[Bioperl-l] problem with alignments and sequence locations Steffen Heyne
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Chris Fields
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Peter
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Chris Fields
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Peter
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Dan Bolser
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Dan Bolser
[Bioperl-l] problem with alignments and sequence locations Florent Angly
[Bioperl-l] Merging separate sequence and quality files to FASTQ ? Chris Fields
[Bioperl-l] Regarding Organism based search in Remote blast Roopa Raghuveer
[Bioperl-l] Regarding Organism based search in Remote blast Chris Fields
[Bioperl-l] Gene critical region analysis -- visual display Robert Bradbury
[Bioperl-l] bioperl-mode new feature: base class browsing Mark A. Jensen
[Bioperl-l] Generalized reciprocal blast Martin MOKREJŠ
[Bioperl-l] Remote blast fork errors / Process limit restrictions Robert Bradbury
[Bioperl-l] Remote blast fork errors / Process limit restrictions Chris Fields
[Bioperl-l] Remote blast fork errors / Process limit restrictions Jason Stajich
[Bioperl-l] fasta format Jonas Schaer
[Bioperl-l] package to associate genes with branches on trees? Adam Witney
[Bioperl-l] fasta format Jason Stajich
[Bioperl-l] [ANNOUNCEMENT] BioPerl Meeting at the GMOD Conference Chris Fields
[Bioperl-l] fasta format Amir Karger
[Bioperl-l] fasta format Kevin Brown
[Bioperl-l] fasta format Smithies, Russell
[Bioperl-l] fasta format Mark A. Jensen
[Bioperl-l] how to map ensembl id to NCBI gi Tom Keller
[Bioperl-l] how to map ensembl id to NCBI gi Chris Fields
[Bioperl-l] about bioperl issue Hsueh
[Bioperl-l] about bioperl issue Scott Markel
[Bioperl-l] about bioperl issue Dave Messina
[Bioperl-l] about bioperl issue Dave Messina
[Bioperl-l] about bioperl issue Hsueh
[Bioperl-l] how to map ensembl id to NCBI gi Pablo Marin-Garcia
[Bioperl-l] extract and write a pdb chain Joan Segura Mora
[Bioperl-l] Proposed project: SeqIO module for msOUT files generated by Hudson's ms Warren W. Kretzschmar
[Bioperl-l] Proposed project: SeqIO module for msOUT filesgenerated by Hudson's ms Mark A. Jensen
[Bioperl-l] extract and write a pdb chain Brian Osborne
[Bioperl-l] Bioperl code help dhwani gandhi
[Bioperl-l] combining tree image with heatmap Adam Witney
[Bioperl-l] problem with install eric_donaldson at med.unc.edu
[Bioperl-l] problem with install Jason Stajich
[Bioperl-l] problem with install Jason Stajich
[Bioperl-l] problem with install Jason Stajich
[Bioperl-l] Bioperl code help Adam Witney
[Bioperl-l] extract and write a pdb chain Joan Segura Mora
[Bioperl-l] parse EMBL Feature Table only Frank Schwach
[Bioperl-l] parse EMBL Feature Table only Dave Messina
[Bioperl-l] problem with install eric_donaldson at med.unc.edu
[Bioperl-l] extract and write a pdb chain Joan Segura Mora
[Bioperl-l] GO::Parser / GO::Model::Term Gowthaman Ramasamy
[Bioperl-l] Issues with loading BioPerl-1.6.0 on to my Mac Mgavi Brathwaite
[Bioperl-l] Issues with loading BioPerl-1.6.0 on to my Mac Brian Osborne
[Bioperl-l] Issues with loading BioPerl-1.6.0 on to my Mac Scott Cain
[Bioperl-l] fasta format Jason Stajich
[Bioperl-l] LocatableSeq NSE format - suggested changes Chris Fields
[Bioperl-l] GO::Parser / GO::Model::Term Bernd Web
[Bioperl-l] parse EMBL Feature Table only Frank Schwach
[Bioperl-l] AGI's fpc stuff: Bio::Map::Physical, Bio::MapIO::fpc, etc Robert Buels
[Bioperl-l] ncurses and bioperl? Tristan Lefebure
[Bioperl-l] ncurses and bioperl? Roy Chaudhuri
[Bioperl-l] ncurses and bioperl? Jason Stajich
[Bioperl-l] Bio::Ontology::OBOEngine for parsing obo files? Nathan Liles
[Bioperl-l] Bio::Ontology::OBOEngine for parsing obo files? Hilmar Lapp
[Bioperl-l] LocatableSeq NSE format - suggested changes Dave Messina
[Bioperl-l] LocatableSeq NSE format - suggested changes Mark A. Jensen
[Bioperl-l] Data missing into Annotation object using Bio::SeqIO (Genbank) Emmanuel Quevillon
[Bioperl-l] Data missing into Annotation object using Bio::SeqIO (Genbank) Chris Fields
[Bioperl-l] Data missing into Annotation object using Bio::SeqIO (Genbank) Emmanuel Quevillon
[Bioperl-l] pdb.pm and annotations Sungsam Gong
[Bioperl-l] Bio::Ontology::OBOEngine for parsing obo files? Nathan Liles
[Bioperl-l] Test post from Google Groups Chris Fields
[Bioperl-l] bioperl-l Google Groups mirror Chris Fields
[Bioperl-l] Test post from Google Groups Ocar Campos
[Bioperl-l] bioperl-l Google Groups mirror Peter
[Bioperl-l] bioperl-l Google Groups mirror Dave Messina
[Bioperl-l] bioperl-l Google Groups mirror Chris Fields
[Bioperl-l] bioperl-l Google Groups mirror Hilmar Lapp
[Bioperl-l] bioperl-l Google Groups mirror Jay Hannah
[Bioperl-l] Remote blast fork errors / Process limit restrictions Robert Bradbury
[Bioperl-l] Remote blast fork errors / Process limit restrictions Robert Bradbury
[Bioperl-l] Remote blast fork errors / Process limit restrictions Chris Fields
[Bioperl-l] Remote blast fork errors / Process limit restrictions Chris Fields
[Bioperl-l] Fwd: blast.pm patch Robson Francisco de Souza
[Bioperl-l] Fwd: blast.pm patch Chris Fields
[Bioperl-l] Fwd: blast.pm patch Peter
[Bioperl-l] Fwd: blast.pm patch Robson Francisco de Souza
[Bioperl-l] Fwd: blast.pm patch Peter
[Bioperl-l] NCBI BlastPlus wrapper for your enjoyment Mark A. Jensen
[Bioperl-l] NCBI BlastPlus wrapper for your enjoyment Dave Messina
[Bioperl-l] NCBI BlastPlus wrapper for your enjoyment Chris Fields
[Bioperl-l] LocatableSeq NSE format - suggested changes Chris Fields
[Bioperl-l] Bio::Graphics and different Glyph sizes Emanuele Osimo
[Bioperl-l] Bio::Graphics and different Glyph sizes Aaron Mackey
[Bioperl-l] Fwd: blast.pm patch Peter
[Bioperl-l] test fail Mark A. Jensen
[Bioperl-l] test fail Chris Fields
[Bioperl-l] Bio::Graphics documentation Scott Cain
[Bioperl-l] Bio::Graphics documentation Chris Fields
[Bioperl-l] test fail Chris Fields
[Bioperl-l] Bio::Graphics documentation Mark A. Jensen
[Bioperl-l] Bio::Graphics documentation Mark A. Jensen
[Bioperl-l] pdb.pm and annotations Mark A. Jensen
[Bioperl-l] call for help and comments on module Dan Kortschak
[Bioperl-l] call for help and comments on module Mark A. Jensen
[Bioperl-l] call for help and comments on module Dan Kortschak
[Bioperl-l] About bioperl issue: get string Hsueh
[Bioperl-l] About bioperl issue: get string Hotz, Hans-Rudolf
[Bioperl-l] PAML parser failed for PAML 4.3b and 4.1 pkuonline
[Bioperl-l] PAML parser failed for PAML 4.3b and 4.1 Chris Fields
[Bioperl-l] PAML parser failed for PAML 4.3b and 4.1 pkuonline
[Bioperl-l] PAML parser failed for PAML 4.3b and 4.1 Dave Messina
[Bioperl-l] PAML parser failed for PAML 4.3b and 4.1 Mark A. Jensen
[Bioperl-l] how to retrieve organism name from accession number? Bhakti Dwivedi
[Bioperl-l] how to retrieve organism name from accession number? Mark A. Jensen
[Bioperl-l] how to retrieve organism name from accession number? Chris Fields
[Bioperl-l] Should Bio::Tools::BPlite be deprecated? arpm9
[Bioperl-l] Comparison between bioperl and biopython? Peng Yu
[Bioperl-l] Comparison between bioperl and biopython? Jason Stajich
[Bioperl-l] Comparison between bioperl and biopython? Andreas Kähäri
[Bioperl-l] [Biopython] Comparison between bioperl and biopython? Sean Davis
[Bioperl-l] Comparison between bioperl and biopython? WangWenzhi
[Bioperl-l] Comparison between bioperl and biopython? Peng Yu
[Bioperl-l] [Biopython] Comparison between bioperl and biopython? Peng Yu
[Bioperl-l] Bio::TreeIO, Bio::Tree::Draw::Cladogram and phyloxml issues.. Alper Yilmaz
[Bioperl-l] [Biopython] Comparison between bioperl and biopython? Jonathan Hilmer
[Bioperl-l] [Biopython] Comparison between bioperl and biopython? William Heath
[Bioperl-l] Document missing on Core/Latest/modules.html Peng Yu
[Bioperl-l] Document missing on Core/Latest/modules.html Jason Stajich
[Bioperl-l] Comparison between bioperl and biopython? Jason Stajich
[Bioperl-l] [Biopython] Comparison between bioperl and biopython? Jason Stajich
[Bioperl-l] How to download the exon sequences, and the exon and CDS boundary for a RefSeq ID? Peng Yu
[Bioperl-l] Document missing on Core/Latest/modules.html Sean Davis
[Bioperl-l] Document missing on Core/Latest/modules.html Peng Yu
[Bioperl-l] How to download the exon sequences, and the exon and CDS boundary for a RefSeq ID? Sean Davis
[Bioperl-l] How to read in the whole fasta file in the memory? Peng Yu
[Bioperl-l] How to read in the whole fasta file in the memory? Sean Davis
[Bioperl-l] How to read in the whole fasta file in the memory? Jason Stajich
[Bioperl-l] How to read in the whole fasta file in the memory? Mark A. Jensen
[Bioperl-l] question about a PAML module Dave Messina

Last message date: Thu Dec 31 05:55:32 EST 2009
Archived on: Thu Dec 31 05:55:40 EST 2009

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