[Bioperl-l] Staden, BioLib and BioPerl

Heikki Lehvaslaiho heikki.lehvaslaiho at gmail.com
Fri Feb 6 00:51:07 EST 2009


This is potentially a very useful addition.  Maybe this is a chance to
get more usage and testing for bioperl-ext. I'd suggest BioLib goes in
there.

Bio::SeqIO::staden::biolib sounds good for the Staden IO lib. The
naming should follow BioPerl conventions and future components from
BioLib will then be placed where they fit logically in BioPerl
namespace.


   -Heikki

2009/2/5 Chris Fields <cjfields at illinois.edu>:
> I have been corresponding off-list with Pjotr Prins, who is heading up the
> BioLib initiative (http://biolib.open-bio.org).  He has managed to get
> SWIG-based perl wrappers set up for the Staden io_lib libraries that compile
> on Mac/Linux and possibly other platforms; for those who want to test it out
> you can get the code (using git) here:
>
> http://github.com/pjotrp/biolib/tree/master
>
> For the Perl-based modules, is there a specific namespace we should use for
> future development, or should we start up a bioperl-biolib?  Maybe
> Bio::SeqIO::staden::biolib?
>
> chris
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-- 
   -Heikki
Heikki Lehvaslaiho - heikki lehvaslaiho gmail com
http://kapkaupunki.blogspot.com/


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